fileionew::FluidCartRegularD< N_dim > Class Template Reference

fluid io for cartesian coordinates, double percision More...

#include <FluidIOnew.hpp>

Collaboration diagram for fileionew::FluidCartRegularD< N_dim >:

Public Member Functions
	FluidCartRegularD ()
	Construct a new Fluid Cart Regular D object. More...
	~FluidCartRegularD ()
	Destroy the Fluid Cart Regular D object. More...
auto &	SetMeshc (const int dim, const int N, const double meshc[])
	Set the Mesh [center] object. More...
auto &	SetMeshf (int dim, int N, const double meshf[])
	Set the Mesh [face] object. More...
auto &	SetGhostMesh (std::vector< int > gh_down, std::vector< int > gh_up={})
	Set the Ghost Mesh object if gh_up={}, it means that gh_down and gh_up have the same size of ghost mesh if the size of gh_down n is below N_dim, the size of ghost mesh of gh_down[n] and gh_down[n+1]...gh_down[N_dim-1] should equal to gh_down[n-1];. More...
auto &	SetGhostMesh (std::vector< std::vector< int >> gh)
auto &	SetGhostMesh (int gh_down, int gh_up=-1)
	Set the Ghost Mesh object if only input gh_down, it means that gh_up=gh_down. More...
auto &	SetDomain (std::vector< double > domain_down, std::vector< double > domain_up)
	Set the compuational Domain object if the size of domain_down/up n is below N_dim, the value of domain_down/up[n] ,[n+1]should equal to domain_down/up[n-1];. More...
auto &	SetDomain (std::vector< std::vector< double >> domain)
auto &	SetFileAttr (std::string name, std::string val)
	Set the File Attributes object not to create attribute, just set the standard attribute to the buffer in current object. More...
auto &	SetFileAttr (std::string name, double val)
	Set the File Attributes object not to create attribute, just set the standard attribute to the buffer in current object. More...
void	Print ()
	Print the abstract of the current file attributes. More...
void	CreateFile (const int istep, const std::string ftype)
	Create a hdf5 File. More...
void	CloseFile ()
	Close opened hdf5 file. More...
void	OpenFile (const int istep, const std::string ftype)
	add extra attribute to different groups [string] More...
auto &	AddAttributeTo (const std::string &grouppath, const std::string attrname, const std::string str)
auto &	AddAttributeTo (const std::string &grouppath, const std::string attrname, const int in)
template<typename T >
auto &	AddDataSetTo (const std::string &grouppath, const std::string dataname, const T indata[], const std::vector< size_t > dims)
void	CalOffset (const std::vector< int > &shape, const std::vector< int > &gridflag, std::vector< hsize_t > &offset)
void	MemSlice (const auto *in, auto *out, const std::vector< int > &shape, const std::vector< hsize_t > &offset, const std::vector< hsize_t > &count)
void	MemExtend (const auto *in, auto *out, const std::vector< int > &shape, const std::vector< hsize_t > &offset, const std::vector< hsize_t > &count)
auto &	AddField (const std::string fieldname, const double data[], const std::vector< int > shape, const std::vector< int > gridflag, const std::vector< int > shapetotal)
auto &	ReadField (const std::string fieldname, double data[], const std::vector< int > shape, const std::vector< int > gridflag, const std::vector< int > shapetotal)
auto &	AddField (const std::string fieldname, double data[], std::vector< int > shape, std::vector< int > gridflag)
	add Field to Field group only support serial version More...

Static Public Member Functions
static void	AllocateBuffer (const int &maxlength)
static void	DeallocateBuffer ()

Public Attributes
hid_t	fileid
	handles of HDF5 More...
hid_t	filepropid
hid_t	geomeshid
hid_t	physparaid
hid_t	otherinfoid
hid_t	fieldid

Private Attributes
const int	_dim = N_dim
h5::FileAccessProps	_fapl
std::string	_casename = "default"
std::string	_space = "physical"
std::string	_filestyle = "onestep"
std::string	_storagestyle = "cartregular"
std::string	_dataspacestyle = "c-style"
std::string	_filepath = "./"
std::string	_filenameprefix = "fluidfield"
std::string	_filename
int	_meshnumc [N_dim] = {0}
int	_meshnumf [N_dim] = {0}
int	_gh_down [N_dim] = {0}
int	_gh_up [N_dim] = {0}
double *	_ptr_meshc [N_dim]
double *	_ptr_meshf [N_dim]
int	_numbernamelength = 7
double	_domain_down [N_dim] = {0}
double	_domain_up [N_dim] = {0}
double	_visc0 = 0.
double	_rho0 = 0.
int	_mpi_coord [N_dim]
int	_mpi_proc [N_dim]

Static Private Attributes
static double *	_rtemp = nullptr
static std::complex< double > *	_ctemp = nullptr
static int	_maxlength = 0

Detailed Description

template<int N_dim>
class fileionew::FluidCartRegularD< N_dim >

fluid io for cartesian coordinates, double percision

Constructor & Destructor Documentation

FluidCartRegularD()

template<int N_dim>

fileionew::FluidCartRegularD< N_dim >::FluidCartRegularD ( )

inline

Construct a new Fluid Cart Regular D object.

References fileionew::FluidCartRegularD< N_dim >::_gh_down, fileionew::FluidCartRegularD< N_dim >::_gh_up, fileionew::FluidCartRegularD< N_dim >::_meshnumc, fileionew::FluidCartRegularD< N_dim >::_meshnumf, fileionew::FluidCartRegularD< N_dim >::_mpi_coord, fileionew::FluidCartRegularD< N_dim >::_mpi_proc, fileionew::FluidCartRegularD< N_dim >::_ptr_meshc, and fileionew::FluidCartRegularD< N_dim >::_ptr_meshf.

~FluidCartRegularD()

template<int N_dim>

fileionew::FluidCartRegularD< N_dim >::~FluidCartRegularD ( )

inline

Destroy the Fluid Cart Regular D object.

References fileionew::FluidCartRegularD< N_dim >::_ptr_meshc, and fileionew::FluidCartRegularD< N_dim >::_ptr_meshf.

Member Function Documentation

AddAttributeTo() [1/2]

template<int N_dim>

auto& fileionew::FluidCartRegularD< N_dim >::AddAttributeTo ( const std::string &  grouppath, const std::string  attrname, const int  in  )

inline

References fileionew::FluidCartRegularD< N_dim >::_fapl, and fileionew::FluidCartRegularD< N_dim >::_filename.

AddAttributeTo() [2/2]

template<int N_dim>

auto& fileionew::FluidCartRegularD< N_dim >::AddAttributeTo ( const std::string &  grouppath, const std::string  attrname, const std::string  str  )

inline

References fileionew::FluidCartRegularD< N_dim >::_fapl, and fileionew::FluidCartRegularD< N_dim >::_filename.

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AddDataSetTo()

template<int N_dim>

template<typename T >

auto& fileionew::FluidCartRegularD< N_dim >::AddDataSetTo ( const std::string &  grouppath, const std::string  dataname, const T  indata[], const std::vector< size_t >  dims  )

inline

References fileionew::FluidCartRegularD< N_dim >::_fapl, fileionew::FluidCartRegularD< N_dim >::_filename, and fileionew::DataSpace().

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AddField() [1/2]

template<int N_dim>

auto & fileionew::FluidCartRegularD< N_dim >::AddField	(	const std::string	fieldname,
		const double	data[],
		const std::vector< int >	shape,
		const std::vector< int >	gridflag,
		const std::vector< int >	shapetotal
	)

References fileionew::check_collective_io(), fileionew::DataSpace(), and fileionew::Fields().

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AddField() [2/2]

template<int N_dim>

auto& fileionew::FluidCartRegularD< N_dim >::AddField ( const std::string  fieldname, double  data[], std::vector< int >  shape, std::vector< int >  gridflag  )

inline

add Field to Field group only support serial version

Parameters

fieldname	field name
data	double data
shape	shape of field at current proc
gridflag	grid flag (1,0,1),(F,c,F)

Returns

auto& *this

References fileionew::FluidCartRegularD< N_dim >::AddField().

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AllocateBuffer()

template<int N_dim>

static void fileionew::FluidCartRegularD< N_dim >::AllocateBuffer ( const int &  maxlength )

inlinestatic

References fileionew::FluidCartRegularD< N_dim >::_ctemp, fileionew::FluidCartRegularD< N_dim >::_maxlength, and fileionew::FluidCartRegularD< N_dim >::_rtemp.

CalOffset()

template<int N_dim>

void fileionew::FluidCartRegularD< N_dim >::CalOffset	(	const std::vector< int > &	shape,
		const std::vector< int > &	gridflag,
		std::vector< hsize_t > &	offset
	)

CloseFile()

template<int N_dim>

void fileionew::FluidCartRegularD< N_dim >::CloseFile

Close opened hdf5 file.

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CreateFile()

template<int N_dim>

void fileionew::FluidCartRegularD< N_dim >::CreateFile	(	const int	istep,
		const std::string	ftype
	)

Create a hdf5 File.

Parameters

istep	computation step
ftype	select a file style, onestep/mid

Returns

auto id of opened file

References fileionew::DataSpace(), fileionew::Fields(), fileionew::FileProps(), fileionew::intTostr(), fileionew::Others(), and fileionew::PhysParams().

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DeallocateBuffer()

template<int N_dim>

static void fileionew::FluidCartRegularD< N_dim >::DeallocateBuffer ( )

inlinestatic

References fileionew::FluidCartRegularD< N_dim >::_ctemp, fileionew::FluidCartRegularD< N_dim >::_maxlength, and fileionew::FluidCartRegularD< N_dim >::_rtemp.

MemExtend()

template<int N_dim>

void fileionew::FluidCartRegularD< N_dim >::MemExtend	(	const auto *	in,
		auto *	out,
		const std::vector< int > &	shape,
		const std::vector< hsize_t > &	offset,
		const std::vector< hsize_t > &	count
	)

MemSlice()

template<int N_dim>

void fileionew::FluidCartRegularD< N_dim >::MemSlice	(	const auto *	in,
		auto *	out,
		const std::vector< int > &	shape,
		const std::vector< hsize_t > &	offset,
		const std::vector< hsize_t > &	count
	)

OpenFile()

template<int N_dim>

void fileionew::FluidCartRegularD< N_dim >::OpenFile	(	const int	istep,
		const std::string	ftype
	)

add extra attribute to different groups [string]

Parameters

group	which group ,a enum constant
attrname	attribute name
str	attribute val

Returns

auto& *this

References fileionew::DataSpace(), fileionew::FileProps(), fileionew::intTostr(), and fileionew::PhysParams().

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Print()

template<int N_dim>

void fileionew::FluidCartRegularD< N_dim >::Print

Print the abstract of the current file attributes.

References fileionew::intTostr().

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ReadField()

template<int N_dim>

auto & fileionew::FluidCartRegularD< N_dim >::ReadField	(	const std::string	fieldname,
		double	data[],
		const std::vector< int >	shape,
		const std::vector< int >	gridflag,
		const std::vector< int >	shapetotal
	)

References fileionew::check_collective_io(), and fileionew::Fields().

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SetDomain() [1/2]

template<int N_dim>

auto& fileionew::FluidCartRegularD< N_dim >::SetDomain ( std::vector< double >  domain_down, std::vector< double >  domain_up  )

inline

Set the compuational Domain object if the size of domain_down/up n is below N_dim, the value of domain_down/up[n] ,[n+1]should equal to domain_down/up[n-1];.

Parameters

domain_down	the lower boundary of Domain
domain_up	the upper boundary of domain

Returns

auto& *this

References fileionew::FluidCartRegularD< N_dim >::_domain_down, and fileionew::FluidCartRegularD< N_dim >::_domain_up.

SetDomain() [2/2]

template<int N_dim>

auto& fileionew::FluidCartRegularD< N_dim >::SetDomain ( std::vector< std::vector< double >>  domain )

inline

References fileionew::FluidCartRegularD< N_dim >::_domain_down, and fileionew::FluidCartRegularD< N_dim >::_domain_up.

SetFileAttr() [1/2]

template<int N_dim>

auto& fileionew::FluidCartRegularD< N_dim >::SetFileAttr ( std::string  name, double  val  )

inline

Set the File Attributes object not to create attribute, just set the standard attribute to the buffer in current object.

Parameters

name	attribute name
val	attribute value

Returns

auto& *this

References fileionew::FluidCartRegularD< N_dim >::_rho0, fileionew::FluidCartRegularD< N_dim >::_visc0, and fileionew::strToLower().

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SetFileAttr() [2/2]

template<int N_dim>

auto& fileionew::FluidCartRegularD< N_dim >::SetFileAttr ( std::string  name, std::string  val  )

inline

Set the File Attributes object not to create attribute, just set the standard attribute to the buffer in current object.

Parameters

name	attribute name
val	attribute value

Returns

auto& *this

References fileionew::FluidCartRegularD< N_dim >::_casename, fileionew::FluidCartRegularD< N_dim >::_dataspacestyle, fileionew::FluidCartRegularD< N_dim >::_filepath, fileionew::FluidCartRegularD< N_dim >::_filestyle, fileionew::FluidCartRegularD< N_dim >::_space, fileionew::FluidCartRegularD< N_dim >::_storagestyle, and fileionew::strToLower().

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SetGhostMesh() [1/3]

template<int N_dim>

auto& fileionew::FluidCartRegularD< N_dim >::SetGhostMesh ( int  gh_down, int  gh_up = -1  )

inline

Set the Ghost Mesh object if only input gh_down, it means that gh_up=gh_down.

Parameters

gh_down	ghost mesh size of lower boudnary
gh_up	ghost mesh size of upper boudnary

Returns

auto& *this

References fileionew::FluidCartRegularD< N_dim >::_gh_down, and fileionew::FluidCartRegularD< N_dim >::_gh_up.

SetGhostMesh() [2/3]

template<int N_dim>

auto& fileionew::FluidCartRegularD< N_dim >::SetGhostMesh ( std::vector< int >  gh_down, std::vector< int >  gh_up = {}  )

inline

Set the Ghost Mesh object if gh_up={}, it means that gh_down and gh_up have the same size of ghost mesh if the size of gh_down n is below N_dim, the size of ghost mesh of gh_down[n] and gh_down[n+1]...gh_down[N_dim-1] should equal to gh_down[n-1];.

Parameters

gh_down	ghost mesh size of lower boudnary
gh_up	ghost mesh size of upper boudnary

Returns

auto& *this

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SetGhostMesh() [3/3]

template<int N_dim>

auto& fileionew::FluidCartRegularD< N_dim >::SetGhostMesh ( std::vector< std::vector< int >>  gh )

inline

References fileionew::FluidCartRegularD< N_dim >::_gh_down, and fileionew::FluidCartRegularD< N_dim >::_gh_up.

SetMeshc()

template<int N_dim>

auto& fileionew::FluidCartRegularD< N_dim >::SetMeshc ( const int  dim, const int  N, const double  meshc[]  )

inline

Set the Mesh [center] object.

Parameters

dim	which dimension/direction
N	size of mesh
meshc	mesh [center]

Returns

auto& *this

References fileionew::FluidCartRegularD< N_dim >::_meshnumc, and fileionew::FluidCartRegularD< N_dim >::_ptr_meshc.

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SetMeshf()

template<int N_dim>

auto& fileionew::FluidCartRegularD< N_dim >::SetMeshf ( int  dim, int  N, const double  meshf[]  )

inline

Set the Mesh [face] object.

Parameters

dim	which dimension/direction
N	size of mesh
meshf	mesh [face]

Returns

auto& *this

References fileionew::FluidCartRegularD< N_dim >::_meshnumf, and fileionew::FluidCartRegularD< N_dim >::_ptr_meshf.

Member Data Documentation

_casename

template<int N_dim>

std::string fileionew::FluidCartRegularD< N_dim >::_casename = "default"

private

_ctemp

template<int N_dim>

std::complex<double>* fileionew::FluidCartRegularD< N_dim >::_ctemp = nullptr

inlinestaticprivate

_dataspacestyle

template<int N_dim>

std::string fileionew::FluidCartRegularD< N_dim >::_dataspacestyle = "c-style"

private

_dim

template<int N_dim>

const int fileionew::FluidCartRegularD< N_dim >::_dim = N_dim

private

_domain_down

template<int N_dim>

double fileionew::FluidCartRegularD< N_dim >::_domain_down[N_dim] = {0}

private

_domain_up

template<int N_dim>

double fileionew::FluidCartRegularD< N_dim >::_domain_up[N_dim] = {0}

private

_fapl

template<int N_dim>

h5::FileAccessProps fileionew::FluidCartRegularD< N_dim >::_fapl

private

_filename

template<int N_dim>

std::string fileionew::FluidCartRegularD< N_dim >::_filename

private

_filenameprefix

template<int N_dim>

std::string fileionew::FluidCartRegularD< N_dim >::_filenameprefix = "fluidfield"

private

_filepath

template<int N_dim>

std::string fileionew::FluidCartRegularD< N_dim >::_filepath = "./"

private

_filestyle

template<int N_dim>

std::string fileionew::FluidCartRegularD< N_dim >::_filestyle = "onestep"

private

_gh_down

template<int N_dim>

int fileionew::FluidCartRegularD< N_dim >::_gh_down[N_dim] = {0}

private

_gh_up

template<int N_dim>

int fileionew::FluidCartRegularD< N_dim >::_gh_up[N_dim] = {0}

private

_maxlength

template<int N_dim>

int fileionew::FluidCartRegularD< N_dim >::_maxlength = 0

inlinestaticprivate

_meshnumc

template<int N_dim>

int fileionew::FluidCartRegularD< N_dim >::_meshnumc[N_dim] = {0}

private

_meshnumf

template<int N_dim>

int fileionew::FluidCartRegularD< N_dim >::_meshnumf[N_dim] = {0}

private

_mpi_coord

template<int N_dim>

int fileionew::FluidCartRegularD< N_dim >::_mpi_coord[N_dim]

private

_mpi_proc

template<int N_dim>

int fileionew::FluidCartRegularD< N_dim >::_mpi_proc[N_dim]

private

_numbernamelength

template<int N_dim>

int fileionew::FluidCartRegularD< N_dim >::_numbernamelength = 7

private

_ptr_meshc

template<int N_dim>

double* fileionew::FluidCartRegularD< N_dim >::_ptr_meshc[N_dim]

private

_ptr_meshf

template<int N_dim>

double* fileionew::FluidCartRegularD< N_dim >::_ptr_meshf[N_dim]

private

_rho0

template<int N_dim>

double fileionew::FluidCartRegularD< N_dim >::_rho0 = 0.

private

_rtemp

template<int N_dim>

double* fileionew::FluidCartRegularD< N_dim >::_rtemp = nullptr

inlinestaticprivate

_space

template<int N_dim>

std::string fileionew::FluidCartRegularD< N_dim >::_space = "physical"

private

_storagestyle

template<int N_dim>

std::string fileionew::FluidCartRegularD< N_dim >::_storagestyle = "cartregular"

private

_visc0

template<int N_dim>

double fileionew::FluidCartRegularD< N_dim >::_visc0 = 0.

private

fieldid

template<int N_dim>

hid_t fileionew::FluidCartRegularD< N_dim >::fieldid

fileid

template<int N_dim>

hid_t fileionew::FluidCartRegularD< N_dim >::fileid

handles of HDF5

filepropid

template<int N_dim>

hid_t fileionew::FluidCartRegularD< N_dim >::filepropid

geomeshid

template<int N_dim>

hid_t fileionew::FluidCartRegularD< N_dim >::geomeshid

otherinfoid

template<int N_dim>

hid_t fileionew::FluidCartRegularD< N_dim >::otherinfoid

physparaid

template<int N_dim>

hid_t fileionew::FluidCartRegularD< N_dim >::physparaid

---

The documentation for this class was generated from the following file:

• /mnt/e/linuxOS/PhyStar/IO/FileIO/FluidIOnew.hpp